Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jrg I09 E3 ubiquitin-protein ligase Mdm2 6.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jrg I09E3 ubiquitin-protein ligase Mdm2 6.3.2 1.100
4jsc 1OYE3 ubiquitin-protein ligase Mdm2 6.3.2 0.824
4jvr 1MTE3 ubiquitin-protein ligase Mdm2 6.3.2 0.803
4ere 0R2E3 ubiquitin-protein ligase Mdm2 6.3.2 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4hbm 0Y7E3 ubiquitin-protein ligase Mdm2 6.3.2 0.742
4erf 0R3E3 ubiquitin-protein ligase Mdm2 6.3.2 0.727
4jwr 1MYE3 ubiquitin-protein ligase Mdm2 6.3.2 0.703
4dij BLFE3 ubiquitin-protein ligase Mdm2 6.3.2 0.689
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2lzg 13QE3 ubiquitin-protein ligase Mdm2 6.3.2 0.653