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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4hs4 FMN Chromate reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4hs4 FMNChromate reductase / 1.133
4h6p FMNChromate reductase / 1.022
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.788
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.760
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.722
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.705
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.704
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.702
2z9d FMNFMN-dependent NADH-azoreductase / 0.699
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.698
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.691
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.690
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.690
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.689
1t0i FMNNAD(P)H-dependent FMN reductase LOT6 / 0.688
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.684
2tsr UMPThymidylate synthase 2.1.1.45 0.684
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.680
4bmo FMNProtein NrdI / 0.680
3qfr FMNNADPH--cytochrome P450 reductase / 0.679
2q9u FMNA-type flavoprotein / 0.678
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.677
2g86 UMPThymidylate synthase / 0.674
4dq1 UMPThymidylate synthase / 0.674
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.673
2bf4 FMNNADPH--cytochrome P450 reductase / 0.665
4j8p FMNFlavodoxin / 0.664
4eb4 UMPThymidylate synthase 2.1.1.45 0.663
4dpd UMPBifunctional dihydrofolate reductase-thymidylate synthase / 0.662
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.662
1b5e DCMDeoxycytidylate 5-hydroxymethyltransferase 2.1.2.8 0.660
3n39 FMNProtein NrdI / 0.660
1b5d DCMDeoxycytidylate 5-hydroxymethyltransferase 2.1.2.8 0.659
2zfa FMNLactate oxidase / 0.659
2ohi FMNType A flavoprotein FprA 1 0.658
3qj7 UMPThymidylate synthase ThyA / 0.658
5by6 UMPThymidylate synthase / 0.658
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.656
1ycf FMNNitric oxide reductase 1 0.655
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.655
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.654
4y7c FMNNADPH--cytochrome P450 reductase / 0.654
1wur 8DGGTP cyclohydrolase 1 / 0.653
4e5o UMPThymidylate synthase 2.1.1.45 0.653
1ych FMNNitric oxide reductase 1 0.652
4l4x NDPAmphI / 0.652
4klv KLVUncharacterized protein / 0.651
1vhn FMNtRNA-dihydrouridine synthase / 0.650