sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4hmx | FMN | Pyridoxamine 5'-phosphate oxidase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4hmx | FMN | Pyridoxamine 5'-phosphate oxidase | / | 1.274 | |
| 4hmw | FMN | Pyridoxamine 5'-phosphate oxidase | / | 1.263 | |
| 4hms | FMN | Phenazine biosynthesis protein PhzG | 1.4 | 1.112 | |
| 1ty9 | FMN | Phenazine biosynthesis protein PhzG | 1.4 | 1.051 | |
| 2i51 | FMN | Pyridoxamine 5'-phosphate oxidase-related, FMN-binding | / | 0.932 | |
| 1wv4 | FMN | Pyridoxine/pyridoxamine 5'-phosphate oxidase | / | 0.842 | |
| 1ci0 | FMN | Pyridoxamine 5'-phosphate oxidase | 1.4.3.5 | 0.841 | |
| 2ou5 | FMN | Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein | / | 0.815 | |
| 2i02 | FMN | Pyridoxamine 5'-phosphate oxidase-related, FMN-binding | / | 0.758 | |
| 2hq9 | FAD | Mll6688 protein | / | 0.739 | |
| 3in6 | FMN | Uncharacterized protein | / | 0.734 | |
| 1i0s | FMN | Ferric-chelate reductase (NAD(P)H) | / | 0.730 | |
| 2a1u | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial | / | 0.719 | |
| 4fk8 | FAD | Ferredoxin--NADP reductase | / | 0.710 | |
| 1efv | FAD | Electron transfer flavoprotein subunit alpha, mitochondrial | / | 0.704 | |
| 3e4v | FMN | Uncharacterized protein | / | 0.704 | |
| 3r5y | F42 | Uncharacterized protein | / | 0.700 | |
| 1krh | FAD | Benzoate 1,2-dioxygenase electron transfer component | 1.18.1.3 | 0.698 | |
| 2pia | FMN | Phthalate dioxygenase reductase | / | 0.694 | |
| 1bjk | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.693 | |
| 1amo | FAD | NADPH--cytochrome P450 reductase | / | 0.692 | |
| 1sm4 | FAD | Ferredoxin--NADP reductase | / | 0.692 | |
| 4bpr | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.692 | |
| 3r5w | F42 | Deazaflavin-dependent nitroreductase | / | 0.691 | |
| 2e83 | FMN | FMN-binding protein | / | 0.690 | |
| 2ed4 | FAD | 4-hydroxyphenylacetate 3-monooxygenase reductase component | 1.5.1.36 | 0.690 | |
| 3r5z | F42 | Uncharacterized protein | / | 0.689 | |
| 1ep3 | FAD | Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit | / | 0.688 | |
| 2z6c | FMN | Phototropin-1 | 2.7.11.1 | 0.688 | |
| 3clt | FAD | Electron transfer flavoprotein subunit alpha | / | 0.688 | |
| 2gpj | FAD | Siderophore-interacting protein | / | 0.687 | |
| 4ybn | FAD | Flavin-nucleotide-binding protein | / | 0.687 | |
| 4f07 | FAD | Styrene monooxygenase component 2 | / | 0.684 | |
| 2zru | FMN | Isopentenyl-diphosphate delta-isomerase | / | 0.683 | |
| 3clr | FAD | Electron transfer flavoprotein subunit alpha | / | 0.682 | |
| 1pkv | RBF | Riboflavin synthase | 2.5.1.9 | 0.678 | |
| 1rz1 | FAD | Phenol 2-hydroxylase component B | / | 0.678 | |
| 3cls | FAD | Electron transfer flavoprotein subunit alpha | / | 0.678 | |
| 1eje | FMN | Protein MTH_152 | / | 0.676 | |
| 3gfy | FMN | Uncharacterized protein | / | 0.675 | |
| 1cqx | FAD | Flavohemoprotein | / | 0.673 | |
| 1o97 | FAD | Electron transfer flavoprotein subunit alpha | / | 0.673 | |
| 4ylf | FAD | Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog | / | 0.673 | |
| 3gg1 | FMN | Uncharacterized protein | / | 0.672 | |
| 1gaq | FAD | Ferredoxin | / | 0.670 | |
| 1ja1 | FAD | NADPH--cytochrome P450 reductase | / | 0.670 | |
| 2eix | FAD | NADH-cytochrome b5 reductase | / | 0.670 | |
| 1icp | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.667 | |
| 3vy2 | FMN | FMN-binding protein | / | 0.666 | |
| 3tjl | FMN | NADPH dehydrogenase | / | 0.665 | |
| 4df2 | FMN | NADPH dehydrogenase | / | 0.664 | |
| 1efp | FAD | Electron transfer flavoprotein subunit alpha | / | 0.663 | |
| 2dji | FAD | Pyruvate oxidase | / | 0.663 | |
| 3is2 | FAD | Vivid PAS protein VVD | / | 0.660 | |
| 1qgz | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.659 | |
| 1fnd | FAD | Ferredoxin--NADP reductase, chloroplastic | 1.18.1.2 | 0.657 | |
| 3qe2 | FAD | NADPH--cytochrome P450 reductase | / | 0.657 | |
| 2bf4 | FAD | NADPH--cytochrome P450 reductase | / | 0.656 | |
| 2pa7 | TYD | TDP-4-oxo-6-deoxy-alpha-D-glucose-3,4-oxoisomerase | 5.3.2.3 | 0.655 | |
| 4eo3 | FMN | Bacterioferritin comigratory protein/NADH dehydrogenase | / | 0.654 | |
| 1umk | FAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.653 | |
| 4hhd | FMN | Phototropin-1 | 2.7.11.1 | 0.653 | |
| 3a3g | DLZ | Lumazine protein | / | 0.652 | |
| 3krf | IPE | Geranyl diphosphate synthase large subunit | / | 0.652 | |
| 3a3b | RBF | Lumazine protein | / | 0.651 | |
| 3p74 | FMN | Pentaerythritol tetranitrate reductase | / | 0.651 |