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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gi4 0EX Queuine tRNA-ribosyltransferase 2.4.2.29

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gi4 0EXQueuine tRNA-ribosyltransferase 2.4.2.29 1.120
4fps 0UXQueuine tRNA-ribosyltransferase 2.4.2.29 1.013
3gc4 AAQQueuine tRNA-ribosyltransferase 2.4.2.29 0.993
4giy 0WYQueuine tRNA-ribosyltransferase 2.4.2.29 0.956
4gkt 0O1Queuine tRNA-ribosyltransferase 2.4.2.29 0.929
4fr1 0V2Queuine tRNA-ribosyltransferase 2.4.2.29 0.895
4fsa 0V3Queuine tRNA-ribosyltransferase 2.4.2.29 0.884
3gc5 2MQQueuine tRNA-ribosyltransferase 2.4.2.29 0.848
3sm0 AEKQueuine tRNA-ribosyltransferase 2.4.2.29 0.836
4gh3 0EVQueuine tRNA-ribosyltransferase 2.4.2.29 0.824
1y5w NEZQueuine tRNA-ribosyltransferase 2.4.2.29 0.791
3ge7 AFQQueuine tRNA-ribosyltransferase 2.4.2.29 0.779
4gh1 0WXQueuine tRNA-ribosyltransferase 2.4.2.29 0.775
4gg9 0WWQueuine tRNA-ribosyltransferase 2.4.2.29 0.774
1q63 AIQQueuine tRNA-ribosyltransferase 2.4.2.29 0.772
1y5v NE8Queuine tRNA-ribosyltransferase 2.4.2.29 0.765
2bbf 344Queuine tRNA-ribosyltransferase 2.4.2.29 0.763
1r5y DQUQueuine tRNA-ribosyltransferase 2.4.2.29 0.762
1q4w DQUQueuine tRNA-ribosyltransferase 2.4.2.29 0.695
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.675
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.670
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.670
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4q8p CKRQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.654