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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gee 0WT DNA gyrase subunit B

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4gee 0WTDNA gyrase subunit B / 0.995
4gfn SUYDNA gyrase subunit B / 0.933
4ggl CJCDNA gyrase subunit B / 0.927
4ksh HTTDNA gyrase subunit B / 0.926
4hxw 1A0DNA gyrase subunit B / 0.921
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4hz5 19YDNA topoisomerase 4 subunit B / 0.678
4duh RLIDNA gyrase subunit B / 0.675
4e5f 0N7Polymerase acidic protein / 0.660