2.700 Å
X-ray
2012-11-14
Name: | DNA topoisomerase 4 subunit B |
---|---|
ID: | PARE_ENTFA |
AC: | H7C794 |
Organism: | Enterococcus faecalis |
Reign: | Bacteria |
TaxID: | 226185 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 84 % |
G | 16 % |
B-Factor: | 44.962 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.598 | 438.750 |
% Hydrophobic | % Polar |
---|---|
46.15 | 53.85 |
According to VolSite |
HET Code: | 19Y |
---|---|
Formula: | C15H14N4O2S |
Molecular weight: | 314.362 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 67.68 % |
Polar Surface area: | 106.06 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 1 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
10.2274 | 39.452 | -5.90818 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C21 | CG2 | ILE- 46 | 3.66 | 0 | Hydrophobic |
C21 | CB | ASN- 49 | 4.11 | 0 | Hydrophobic |
C4 | CB | ASN- 49 | 4.35 | 0 | Hydrophobic |
C22 | CB | ALA- 50 | 4.12 | 0 | Hydrophobic |
S10 | CG | GLU- 53 | 3.91 | 0 | Hydrophobic |
C22 | CG1 | VAL- 74 | 3.93 | 0 | Hydrophobic |
N2 | OD2 | ASP- 76 | 2.75 | 170.5 | H-Bond (Ligand Donor) |
S10 | CB | ARG- 79 | 4.5 | 0 | Hydrophobic |
C4 | CG | MET- 81 | 3.95 | 0 | Hydrophobic |
C18 | CD1 | ILE- 96 | 3.81 | 0 | Hydrophobic |
C22 | CG2 | THR- 169 | 4.34 | 0 | Hydrophobic |
C21 | CG2 | VAL- 171 | 4.02 | 0 | Hydrophobic |