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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4euc 0RQ Succinyl-CoA:acetate CoA-transferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4euc 0RQSuccinyl-CoA:acetate CoA-transferase / 1.209
4eub COASuccinyl-CoA:acetate CoA-transferase / 0.982
4eu5 COASuccinyl-CoA:acetate CoA-transferase / 0.916
5dw5 0T1Succinyl-CoA:acetate CoA-transferase / 0.820
4eu6 COASuccinyl-CoA:acetate CoA-transferase / 0.819
5e5h 0T1Succinyl-CoA:acetate CoA-transferase / 0.809
5dw6 0T1Succinyl-CoA:acetate CoA-transferase / 0.795
4eua COASuccinyl-CoA:acetate CoA-transferase / 0.786
4eu9 COASuccinyl-CoA:acetate CoA-transferase / 0.784
4eu8 COASuccinyl-CoA:acetate CoA-transferase / 0.782
4eud COASuccinyl-CoA:acetate CoA-transferase / 0.775
4eu4 COASuccinyl-CoA:acetate CoA-transferase / 0.742
4n8i COAPutative 4-hydroxybutyrate coenzyme A transferase / 0.707