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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4erk OLO Mitogen-activated protein kinase 1 2.7.11.24

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4erk OLOMitogen-activated protein kinase 1 2.7.11.24 0.813
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.663
2r3o 2SCCyclin-dependent kinase 2 2.7.11.22 0.663
4e5f 0N7Polymerase acidic protein / 0.660
2r3r 6SCCyclin-dependent kinase 2 2.7.11.22 0.659
3ddq RRCCyclin-dependent kinase 2 2.7.11.22 0.654
2a4l RRCCyclin-dependent kinase 2 2.7.11.22 0.653
1v0p PVBCell division control protein 2 homolog 2.7.11.22 0.651