2.200 Å
X-ray
1998-07-09
Name: | Mitogen-activated protein kinase 1 |
---|---|
ID: | MK01_RAT |
AC: | P63086 |
Organism: | Rattus norvegicus |
Reign: | Eukaryota |
TaxID: | 10116 |
EC Number: | 2.7.11.24 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 45.460 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.649 | 482.625 |
% Hydrophobic | % Polar |
---|---|
41.96 | 58.04 |
According to VolSite |
HET Code: | OLO |
---|---|
Formula: | C15H18N6O |
Molecular weight: | 298.343 g/mol |
DrugBank ID: | DB02116 |
Buried Surface Area: | 48.57 % |
Polar Surface area: | 87.89 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-17.0565 | 15.3082 | 42.444 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4 | CG2 | ILE- 29 | 3.92 | 0 | Hydrophobic |
C12 | CG2 | ILE- 29 | 4.13 | 0 | Hydrophobic |
C11 | CG2 | ILE- 29 | 3.37 | 0 | Hydrophobic |
C4 | CB | VAL- 37 | 4.16 | 0 | Hydrophobic |
C3 | CB | ALA- 50 | 3.99 | 0 | Hydrophobic |
C3 | CB | GLN- 103 | 3.78 | 0 | Hydrophobic |
N1 | N | MET- 106 | 2.7 | 134.1 | H-Bond (Protein Donor) |
N5 | O | MET- 106 | 2.51 | 139.47 | H-Bond (Ligand Donor) |
C8 | CD | LYS- 112 | 3.44 | 0 | Hydrophobic |
C3 | CD1 | LEU- 154 | 4.37 | 0 | Hydrophobic |