2.200 Å
X-ray
1998-07-09
| Name: | Mitogen-activated protein kinase 1 |
|---|---|
| ID: | MK01_RAT |
| AC: | P63086 |
| Organism: | Rattus norvegicus |
| Reign: | Eukaryota |
| TaxID: | 10116 |
| EC Number: | 2.7.11.24 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 45.460 |
|---|---|
| Number of residues: | 23 |
| Including | |
| Standard Amino Acids: | 23 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.649 | 482.625 |
| % Hydrophobic | % Polar |
|---|---|
| 41.96 | 58.04 |
| According to VolSite | |

| HET Code: | OLO |
|---|---|
| Formula: | C15H18N6O |
| Molecular weight: | 298.343 g/mol |
| DrugBank ID: | DB02116 |
| Buried Surface Area: | 48.57 % |
| Polar Surface area: | 87.89 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -17.0565 | 15.3082 | 42.444 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C4 | CG2 | ILE- 29 | 3.92 | 0 | Hydrophobic |
| C12 | CG2 | ILE- 29 | 4.13 | 0 | Hydrophobic |
| C11 | CG2 | ILE- 29 | 3.37 | 0 | Hydrophobic |
| C4 | CB | VAL- 37 | 4.16 | 0 | Hydrophobic |
| C3 | CB | ALA- 50 | 3.99 | 0 | Hydrophobic |
| C3 | CB | GLN- 103 | 3.78 | 0 | Hydrophobic |
| N1 | N | MET- 106 | 2.7 | 134.1 | H-Bond (Protein Donor) |
| N5 | O | MET- 106 | 2.51 | 139.47 | H-Bond (Ligand Donor) |
| C8 | CD | LYS- 112 | 3.44 | 0 | Hydrophobic |
| C3 | CD1 | LEU- 154 | 4.37 | 0 | Hydrophobic |