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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4eqg A5A Histidine triad nucleotide-binding protein 1 3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4eqg A5AHistidine triad nucleotide-binding protein 1 3 1.020
4eqe KAAHistidine triad nucleotide-binding protein 1 3 1.016
1rzy 5ASHistidine triad nucleotide-binding protein 1 3 0.859
3n1s 5GPPurine nucleoside phosphoramidase / 0.831
5i2f BS5Histidine triad nucleotide-binding protein 1 3 0.824
4egu 5GPPutative histidine triad (HIT) protein / 0.798
3n1t 5GPPurine nucleoside phosphoramidase / 0.743
3oxk 5GPHistidine triad nucleotide-binding protein 3 0.729
1xmm M7Gm7GpppX diphosphatase 3.6.1.59 0.721
2h39 ADQADP-glucose phosphorylase / 0.713
5fit AP2Bis(5'-adenosyl)-triphosphatase 3.6.1.29 0.692
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.678
5je3 SAHMethyl transferase / 0.677
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.675
5fa5 MTAProtein arginine N-methyltransferase 5 / 0.672
4iv8 SAMPhosphoethanolamine N-methyltransferase,putative / 0.668
1st0 GTGm7GpppX diphosphatase 3.6.1.59 0.663
3epp SFGmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.662
2qe6 SAMUncharacterized protein / 0.661
2ore SAHDNA adenine methylase 2.1.1.72 0.660
4mb2 ATPUncharacterized protein / 0.660
1rp0 AHZThiamine thiazole synthase, chloroplastic / 0.658
2np7 NEAModification methylase TaqI 2.1.1.72 0.658
3a26 MTAtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.658
5je4 SAHMethyl transferase / 0.657
4ckb SAHmRNA-capping enzyme catalytic subunit 2.1.1.56 0.655
2p35 SAHTrans-aconitate 2-methyltransferase / 0.653
5e9w SAHmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.652
4rto SFGDNA adenine methylase 2.1.1.72 0.651
1y9d FADPyruvate oxidase 1.2.3.3 0.650
5e72 SAMN2, N2-dimethylguanosine tRNA methyltransferase / 0.650