Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ear IM5 Purine nucleoside phosphorylase 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ear IM5Purine nucleoside phosphorylase 2.4.2.1 0.910
2p4s DIHAGAP005945-PA / 0.804
2a0y DIHPurine nucleoside phosphorylase 2.4.2.1 0.751
2a0w DIHPurine nucleoside phosphorylase 2.4.2.1 0.745
2a0x DIHPurine nucleoside phosphorylase 2.4.2.1 0.745
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.744
1b8o IMHPurine nucleoside phosphorylase 2.4.2.1 0.726
3k8o 229Purine nucleoside phosphorylase 2.4.2.1 0.717
1rsz DIHPurine nucleoside phosphorylase 2.4.2.1 0.716
1rr6 IMHPurine nucleoside phosphorylase 2.4.2.1 0.711
2oc4 IMHPurine nucleoside phosphorylase 2.4.2.1 0.694
3k8q 22APurine nucleoside phosphorylase 2.4.2.1 0.692
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.689
3bgs DIHPurine nucleoside phosphorylase 2.4.2.1 0.681
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.665
1rt9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.661
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
3iex GMPPurine nucleoside phosphorylase / 0.650