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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4eak ATP 5'-AMP-activated protein kinase subunit gamma-1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 1.070
2y8q ADP5'-AMP-activated protein kinase subunit gamma-1 / 0.773
4dqw ATPInosine-5'-monophosphate dehydrogenase / 0.760
2v9j ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.727
3kh5 ADPUncharacterized protein MJ1225 / 0.726
3lfz ADPUncharacterized protein MJ1225 / 0.719
2y8l ADP5'-AMP-activated protein kinase subunit gamma-1 / 0.706
4fry NADPutative signal-transduction protein with CBS domains / 0.690
4eaj ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.689
2v92 ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.687
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.678
1yf3 SAHDNA adenine methylase / 0.674
4eag ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.670
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.669
2pkm ADNAdenosine kinase 2.7.1.20 0.667
2yy5 WSATryptophan--tRNA ligase 6.1.1.2 0.665
1xjq ADPBifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 2.7.1.25 0.664
3qtt ANPPantothenate synthetase / 0.663
3wfj NAD2-dehydropantoate 2-reductase / 0.660
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.657
2i5b ADPPyridoxine kinase / 0.657
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.657
3h0l ADPAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 6.3.5 0.657
2d32 ANPGlutamate--cysteine ligase 6.3.2.2 0.656
2qrd ADP5'-AMP-activated protein kinase subunit gamma / 0.656
3kpb SAMUncharacterized protein MJ0100 / 0.655
2gs9 SAHUncharacterized protein / 0.654
2ya3 J7V5'-AMP-activated protein kinase subunit gamma-1 / 0.654
4da8 BG2Purine nucleoside phosphorylase DeoD-type 2.4.2.1 0.654
4n9w GDPPhosphatidyl-myo-inositol mannosyltransferase 2.4.1.57 0.654
4wuo NAD3-isopropylmalate dehydrogenase 1.1.1.85 0.654
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.653
2q28 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.651
4yuz S4MSpermidine synthase, putative / 0.651
3cfo GMPDNA-directed DNA polymerase / 0.650