2.400 Å
X-ray
2005-09-25
Name: | Glutamate--cysteine ligase |
---|---|
ID: | GSH1_ECOLI |
AC: | P0A6W9 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 6.3.2.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 43.261 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 3 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MG MG MG |
Ligandability | Volume (Å3) |
---|---|
0.043 | 283.500 |
% Hydrophobic | % Polar |
---|---|
52.38 | 47.62 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 63.86 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
14.5793 | 78.4712 | 6.38313 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3' | CG2 | ILE- 69 | 3.64 | 0 | Hydrophobic |
O3' | O | THR- 70 | 2.85 | 157.81 | H-Bond (Ligand Donor) |
O2' | O | THR- 70 | 2.69 | 172.97 | H-Bond (Ligand Donor) |
C2' | CB | VAL- 72 | 4.3 | 0 | Hydrophobic |
C4' | CB | ASN- 152 | 4.36 | 0 | Hydrophobic |
C1' | CB | ASN- 152 | 3.67 | 0 | Hydrophobic |
N6 | OG | SER- 154 | 3.38 | 126.04 | H-Bond (Ligand Donor) |
N1 | OG | SER- 154 | 2.6 | 152.6 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 306 | 2.81 | 153.27 | H-Bond (Protein Donor) |
O2B | NZ | LYS- 306 | 2.81 | 0 | Ionic (Protein Cationic) |
N6 | OE2 | GLU- 325 | 3.48 | 143.97 | H-Bond (Ligand Donor) |
C1' | CE2 | TYR- 326 | 4.34 | 0 | Hydrophobic |
DuAr | DuAr | TYR- 326 | 3.98 | 0 | Aromatic Face/Face |
O3G | MG | MG- 2523 | 2.3 | 0 | Metal Acceptor |
O1B | MG | MG- 2523 | 2.66 | 0 | Metal Acceptor |
O1G | MG | MG- 2524 | 2.18 | 0 | Metal Acceptor |
O2A | MG | MG- 2524 | 2.07 | 0 | Metal Acceptor |
O3G | O | HOH- 2575 | 2.85 | 162.37 | H-Bond (Protein Donor) |