2.300 Å
X-ray
2009-04-09
Name: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B |
---|---|
ID: | GATB_AQUAE |
AC: | O66766 |
Organism: | Aquifex aeolicus |
Reign: | Bacteria |
TaxID: | 224324 |
EC Number: | 6.3.5 |
Chain Name: | Percentage of Residues within binding site |
---|---|
K | 100 % |
B-Factor: | 51.627 |
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Number of residues: | 23 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.089 | 270.000 |
% Hydrophobic | % Polar |
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48.75 | 51.25 |
According to VolSite |
HET Code: | ADP |
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Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 52.7 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
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H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-134.731 | 9.41185 | 11.0153 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | CG | GLU- 12 | 3.78 | 0 | Hydrophobic |
C3' | CG1 | VAL- 155 | 3.49 | 0 | Hydrophobic |
O3' | O | THR- 156 | 2.87 | 147.6 | H-Bond (Ligand Donor) |
O2' | O | THR- 156 | 2.79 | 145.46 | H-Bond (Ligand Donor) |
C2' | CG | PRO- 158 | 4.45 | 0 | Hydrophobic |
C1' | CB | ASN- 197 | 3.81 | 0 | Hydrophobic |
N6 | OG | SER- 199 | 3.32 | 129.84 | H-Bond (Ligand Donor) |
N1 | OG | SER- 199 | 2.73 | 169.67 | H-Bond (Protein Donor) |