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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dko 0LM Envelope glycoprotein gp160

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4dko 0LMEnvelope glycoprotein gp160 / 0.866
4i54 1C1Envelope glycoprotein gp160 / 0.745
4i53 1C1Envelope glycoprotein gp160 / 0.733
4dkp 0LLEnvelope glycoprotein gp160 / 0.719
4dvv 0M1Envelope glycoprotein gp160 / 0.719
4dkv 0KWEnvelope glycoprotein gp160 / 0.690
4dku 0KUEnvelope glycoprotein gp160 / 0.686