2.490 Å
X-ray
2012-02-04
| Name: | Envelope glycoprotein gp160 |
|---|---|
| ID: | Q0ED31_9HIV1 |
| AC: | Q0ED31 |
| Organism: | Human immunodeficiency virus 1 |
| Reign: | Viruses |
| TaxID: | 11676 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 66.387 |
|---|---|
| Number of residues: | 26 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.084 | 280.125 |
| % Hydrophobic | % Polar |
|---|---|
| 61.45 | 38.55 |
| According to VolSite | |

| HET Code: | 0KU |
|---|---|
| Formula: | C19H24ClN4O3S |
| Molecular weight: | 423.937 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 44.1 % |
| Polar Surface area: | 136.16 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -10.1755 | -33.1024 | -1.56529 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C02 | CG1 | VAL- 255 | 4.12 | 0 | Hydrophobic |
| C03 | CG2 | THR- 257 | 3.64 | 0 | Hydrophobic |
| C03 | CB | GLU- 370 | 4.06 | 0 | Hydrophobic |
| C05 | CG | GLU- 370 | 3.73 | 0 | Hydrophobic |
| C17 | CG1 | ILE- 371 | 3.81 | 0 | Hydrophobic |
| C01 | CB | SER- 375 | 4.18 | 0 | Hydrophobic |
| CL1 | CD1 | PHE- 382 | 4.34 | 0 | Hydrophobic |
| C05 | CG2 | ILE- 424 | 4.35 | 0 | Hydrophobic |
| N08 | O | ASN- 425 | 3.16 | 154.52 | H-Bond (Ligand Donor) |
| C03 | CB | TRP- 427 | 4.01 | 0 | Hydrophobic |
| C05 | CB | TRP- 427 | 3.91 | 0 | Hydrophobic |
| C03 | CD1 | ILE- 475 | 4.1 | 0 | Hydrophobic |