1.800 Å
X-ray
2012-02-03
| Name: | Envelope glycoprotein gp160 |
|---|---|
| ID: | Q0ED31_9HIV1 |
| AC: | Q0ED31 |
| Organism: | Human immunodeficiency virus 1 |
| Reign: | Viruses |
| TaxID: | 11676 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 100 % |
| B-Factor: | 35.498 |
|---|---|
| Number of residues: | 25 |
| Including | |
| Standard Amino Acids: | 24 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.569 | 286.875 |
| % Hydrophobic | % Polar |
|---|---|
| 49.41 | 50.59 |
| According to VolSite | |

| HET Code: | 0LL |
|---|---|
| Formula: | C17H16ClFN3O2 |
| Molecular weight: | 348.779 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 51.77 % |
| Polar Surface area: | 85.84 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 2 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| -9.52175 | -33.0127 | 0.197542 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CL | CH2 | TRP- 112 | 4.08 | 0 | Hydrophobic |
| F24 | CG1 | VAL- 255 | 3.67 | 0 | Hydrophobic |
| C22 | CG2 | THR- 257 | 4.16 | 0 | Hydrophobic |
| F24 | CG2 | THR- 257 | 4.06 | 0 | Hydrophobic |
| C22 | CG | GLU- 370 | 4.16 | 0 | Hydrophobic |
| C18 | CG | GLU- 370 | 3.95 | 0 | Hydrophobic |
| C02 | CD1 | ILE- 371 | 3.86 | 0 | Hydrophobic |
| F24 | CB | SER- 375 | 4.19 | 0 | Hydrophobic |
| CL | CB | ASN- 377 | 4.15 | 0 | Hydrophobic |
| CL | CD2 | PHE- 382 | 3.97 | 0 | Hydrophobic |
| N14 | O | ASN- 425 | 3.21 | 139.62 | H-Bond (Ligand Donor) |
| C22 | CB | TRP- 427 | 3.93 | 0 | Hydrophobic |
| C18 | CB | TRP- 427 | 3.95 | 0 | Hydrophobic |
| C06 | CB | ASN- 474 | 4.24 | 0 | Hydrophobic |