1.980 Å
X-ray
2012-02-03
| Name: | Envelope glycoprotein gp160 |
|---|---|
| ID: | Q0ED31_9HIV1 |
| AC: | Q0ED31 |
| Organism: | Human immunodeficiency virus 1 |
| Reign: | Viruses |
| TaxID: | 11676 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 32.644 |
|---|---|
| Number of residues: | 27 |
| Including | |
| Standard Amino Acids: | 27 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.008 | 273.375 |
| % Hydrophobic | % Polar |
|---|---|
| 61.73 | 38.27 |
| According to VolSite | |

| HET Code: | 0LM |
|---|---|
| Formula: | C18H26ClFN3O2 |
| Molecular weight: | 370.869 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 54.35 % |
| Polar Surface area: | 62.64 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 2 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 27.8264 | -14.3281 | 37.8429 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| F25 | CG1 | VAL- 255 | 3.67 | 0 | Hydrophobic |
| F25 | CG2 | THR- 257 | 3.6 | 0 | Hydrophobic |
| C04 | CG | GLU- 370 | 4.09 | 0 | Hydrophobic |
| C06 | CG | GLU- 370 | 3.79 | 0 | Hydrophobic |
| F25 | CB | SER- 375 | 4.14 | 0 | Hydrophobic |
| CL | CB | ASN- 377 | 4.46 | 0 | Hydrophobic |
| CL | CD2 | PHE- 382 | 3.68 | 0 | Hydrophobic |
| C06 | CG2 | ILE- 424 | 3.74 | 0 | Hydrophobic |
| N07 | O | ASN- 425 | 3.29 | 126.68 | H-Bond (Ligand Donor) |
| C04 | CB | TRP- 427 | 4 | 0 | Hydrophobic |
| C06 | CB | TRP- 427 | 3.85 | 0 | Hydrophobic |
| N11 | O | GLY- 473 | 3.41 | 162.72 | H-Bond (Ligand Donor) |
| C21 | CB | ASN- 474 | 4.33 | 0 | Hydrophobic |
| C04 | CD1 | ILE- 475 | 4.47 | 0 | Hydrophobic |
| F25 | CD1 | ILE- 475 | 4.49 | 0 | Hydrophobic |