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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4daj 0HK Muscarinic acetylcholine receptor M3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4daj 0HKMuscarinic acetylcholine receptor M3 / 0.922
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4u14 0HKMuscarinic acetylcholine receptor M3 / 0.721
4e5l DBHPolymerase acidic protein / 0.693
5cxv 0HKMuscarinic acetylcholine receptor M1 / 0.668
4e5f 0N7Polymerase acidic protein / 0.660
5dsg 0HKMuscarinic acetylcholine receptor M4 / 0.655