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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4col DTP Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4col DTPUncharacterized protein / 1.163
4coj DTPUncharacterized protein / 0.941
1b38 ATPCyclin-dependent kinase 2 2.7.11.22 0.681
1cjv DADAdenylate cyclase type 2 / 0.679
1cjv DADAdenylate cyclase type 5 / 0.679
3lmg ANPReceptor tyrosine-protein kinase erbB-3 2.7.10.1 0.676
4r3a ANPBlue-light-activated histidine kinase 2 2.7.13.3 0.675
4r39 ANPBlue-light-activated histidine kinase 2 2.7.13.3 0.673
4m69 ANPReceptor-interacting serine/threonine-protein kinase 3 2.7.11.1 0.668
1mx0 ANPType 2 DNA topoisomerase 6 subunit B / 0.665
4xc0 ACPHeat shock cognate 90 kDa protein / 0.663
2pz8 APCNH(3)-dependent NAD(+) synthetase / 0.659
5eso TDP2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.659
1pox TPPPyruvate oxidase 1.2.3.3 0.657
1nhh ANPDNA mismatch repair protein MutL / 0.655
2vwi ANPSerine/threonine-protein kinase OSR1 2.7.11.1 0.655
4fh5 UTPTerminal uridylyltransferase cid1 / 0.653
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.652
4tl6 ANPCircadian clock protein kinase KaiC 2.7.11.1 0.652
2qta TDPPyruvate dehydrogenase E1 component 1.2.4.1 0.651
4wud ANPDNA gyrase subunit B / 0.650