Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bgb ADP Predicted molecular chaperone distantly related to HSP70-fold metalloproteases

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bgb ADPPredicted molecular chaperone distantly related to HSP70-fold metalloproteases / 1.097
4bga ADPPredicted molecular chaperone distantly related to HSP70-fold metalloproteases / 0.749
1s16 ANPDNA topoisomerase 4 subunit B / 0.689
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.684
2w4j ADPDeath-associated protein kinase 1 2.7.11.1 0.682
3gu7 ADPDeath-associated protein kinase 1 2.7.11.1 0.682
2d1t SLULuciferin 4-monooxygenase 1.13.12.7 0.679
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.674
4mo4 ACPAnhydro-N-acetylmuramic acid kinase / 0.668
3qbw ADPAnhydro-N-acetylmuramic acid kinase / 0.667
2ydo ADNAdenosine receptor A2a / 0.665
3gub GUBDeath-associated protein kinase 1 2.7.11.1 0.659
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.658
5c40 ACPRibokinase / 0.656
1q12 ATPMaltose/maltodextrin import ATP-binding protein MalK / 0.654
1cgp CMPcAMP-activated global transcriptional regulator CRP / 0.653
3gu5 ANPDeath-associated protein kinase 1 2.7.11.1 0.652
3oij SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.652
3x2w ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
2e2q ADPATP-dependent hexokinase / 0.651
3f5u ANPDeath-associated protein kinase 1 2.7.11.1 0.650
3t9d ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.650
4uak ADPSerine/threonine-protein kinase MRCK beta 2.7.11.1 0.650