scPDB - 4mo4 entry

Protein Data Bank Entry:

PDB ID : 4mo4

Resolution :1.670 Å

Experimental Method : X-ray

Deposition Date : 2013-09-11

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Anhydro-N-acetylmuramic acid kinase
ID:	ANMK_PSEAE
AC:	Q9I5Q5
Organism:	Pseudomonas aeruginosa
Reign:	Bacteria
TaxID:	208964
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
B	100 %

Ligand binding site composition:

B-Factor:	37.938
Number of residues:	37
Including
Standard Amino Acids:	35
Non Standard Amino Acids:	0
Water Molecules:	2
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.139	658.125

% Hydrophobic	% Polar
34.87	65.13
According to VolSite

Ligand :

HET Code:	ACP
Formula:	C11H14N5O12P3
Molecular weight:	501.176 g/mol
DrugBank ID:	DB03909
Buried Surface Area:	49.55 %
Polar Surface area:	310.64 Å2

Number of
H-Bond Acceptors:	16
H-Bond Donors:	3
Rings:	3
Aromatic rings:	2
Anionic atoms:	4
Cationic atoms:	0
Rule of Five Violation:	2
Rotatable Bonds:	8

Mass center Coordinates

X	Y	Z
33.3582	-34.9411	-16.4439

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C3B	CB	SER- 12	3.76	0	Hydrophobic	false
O2G	N	GLY- 165	2.65	155.02	H-Bond (Protein Donor)	false
C4'	CB	ASN- 187	4.46	0	Hydrophobic	false
C2'	CB	ASN- 187	4.28	0	Hydrophobic	false
O2'	OD1	ASP- 191	2.61	147.79	H-Bond (Ligand Donor)	false
C2'	CB	PHE- 202	3.55	0	Hydrophobic	false
N1	N	ASP- 205	2.87	153.54	H-Bond (Protein Donor)	false
O1A	N	GLY- 292	2.77	155.8	H-Bond (Protein Donor)	false
N3	O	HOH- 624	2.95	179.96	H-Bond (Protein Donor)	false