2.600 Å
X-ray
2013-03-24
Name: | Predicted molecular chaperone distantly related to HSP70-fold metalloproteases |
---|---|
ID: | Q8TX37_METKA |
AC: | Q8TX37 |
Organism: | Methanopyrus kandleri |
Reign: | Archaea |
TaxID: | 190192 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 96 % |
C | 4 % |
B-Factor: | 29.383 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.643 | 999.000 |
% Hydrophobic | % Polar |
---|---|
32.09 | 67.91 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 49.06 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-1.8463 | -6.49674 | 22.769 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | OG1 | THR- 48 | 2.98 | 138 | H-Bond (Protein Donor) |
C2' | CB | THR- 191 | 4.48 | 0 | Hydrophobic |
C4' | CB | THR- 191 | 4.5 | 0 | Hydrophobic |
O3' | OG1 | THR- 191 | 3.12 | 163.91 | H-Bond (Ligand Donor) |
O2' | OD1 | ASP- 195 | 2.72 | 164.6 | H-Bond (Ligand Donor) |
C2' | CB | TYR- 206 | 3.77 | 0 | Hydrophobic |
C3' | CD2 | TYR- 206 | 4.32 | 0 | Hydrophobic |
N6 | OE2 | GLU- 208 | 3.43 | 160.1 | H-Bond (Ligand Donor) |
N1 | N | GLY- 209 | 2.87 | 161.95 | H-Bond (Protein Donor) |
O1A | N | GLY- 298 | 3.44 | 156.8 | H-Bond (Protein Donor) |