2.600 Å
X-ray
2013-03-24
| Name: | Predicted molecular chaperone distantly related to HSP70-fold metalloproteases |
|---|---|
| ID: | Q8TX37_METKA |
| AC: | Q8TX37 |
| Organism: | Methanopyrus kandleri |
| Reign: | Archaea |
| TaxID: | 190192 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 96 % |
| C | 4 % |
| B-Factor: | 29.383 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.643 | 999.000 |
| % Hydrophobic | % Polar |
|---|---|
| 32.09 | 67.91 |
| According to VolSite | |

| HET Code: | ADP |
|---|---|
| Formula: | C10H12N5O10P2 |
| Molecular weight: | 424.177 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 49.06 % |
| Polar Surface area: | 260.7 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 14 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 3 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| -1.8463 | -6.49674 | 22.769 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1B | OG1 | THR- 48 | 2.98 | 138 | H-Bond (Protein Donor) |
| C2' | CB | THR- 191 | 4.48 | 0 | Hydrophobic |
| C4' | CB | THR- 191 | 4.5 | 0 | Hydrophobic |
| O3' | OG1 | THR- 191 | 3.12 | 163.91 | H-Bond (Ligand Donor) |
| O2' | OD1 | ASP- 195 | 2.72 | 164.6 | H-Bond (Ligand Donor) |
| C2' | CB | TYR- 206 | 3.77 | 0 | Hydrophobic |
| C3' | CD2 | TYR- 206 | 4.32 | 0 | Hydrophobic |
| N6 | OE2 | GLU- 208 | 3.43 | 160.1 | H-Bond (Ligand Donor) |
| N1 | N | GLY- 209 | 2.87 | 161.95 | H-Bond (Protein Donor) |
| O1A | N | GLY- 298 | 3.44 | 156.8 | H-Bond (Protein Donor) |