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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4bga ADP Predicted molecular chaperone distantly related to HSP70-fold metalloproteases

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4bga ADPPredicted molecular chaperone distantly related to HSP70-fold metalloproteases / 0.873
4bgb ADPPredicted molecular chaperone distantly related to HSP70-fold metalloproteases / 0.749
2j9g ADPBiotin carboxylase 6.3.4.14 0.680
4mo4 ACPAnhydro-N-acetylmuramic acid kinase / 0.669
3rv4 ADPBiotin carboxylase 6.3.4.14 0.660
2zdg ADPD-alanine--D-alanine ligase / 0.652