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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4avl TMP Polymerase acidic protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4avl TMPPolymerase acidic protein / 0.961
5ccy TMPPolymerase acidic protein / 0.811
5d4g U5PPolymerase acidic protein / 0.803
4y6n UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.703
4y6u UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.681
2q3e UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.667
1i3n UD1UDP-glucose 4-epimerase / 0.656
4e5l DBHPolymerase acidic protein / 0.654
1i3l GDUUDP-glucose 4-epimerase / 0.653
4e5f 0N7Polymerase acidic protein / 0.653
1i3k UPGUDP-glucose 4-epimerase / 0.651
4nv1 0FXFormyl transferase / 0.651
3ptz UDXUDP-glucose 6-dehydrogenase 1.1.1.22 0.650
3vjo ANPEpidermal growth factor receptor 2.7.10.1 0.650
4nv1 4TGFormyl transferase / 0.650