2.080 Å
X-ray
2015-08-07
| Name: | Polymerase acidic protein |
|---|---|
| ID: | C3W5S0_I09A0 |
| AC: | C3W5S0 |
| Organism: | Influenza A virus |
| Reign: | Viruses |
| TaxID: | 641501 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 41.150 |
|---|---|
| Number of residues: | 23 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MN MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.132 | 651.375 |
| % Hydrophobic | % Polar |
|---|---|
| 39.38 | 60.62 |
| According to VolSite | |

| HET Code: | U5P |
|---|---|
| Formula: | C9H11N2O9P |
| Molecular weight: | 322.165 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 40.94 % |
| Polar Surface area: | 181.33 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 9 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 28.1654 | -17.0008 | -14.9401 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2 | NZ | LYS- 34 | 3.2 | 134.86 | H-Bond (Protein Donor) |
| C1' | CG1 | ILE- 38 | 4.27 | 0 | Hydrophobic |
| C4' | CG1 | ILE- 38 | 4.4 | 0 | Hydrophobic |
| C4' | CB | HIS- 41 | 4.14 | 0 | Hydrophobic |
| O1P | NZ | LYS- 115 | 3.07 | 0 | Ionic (Protein Cationic) |
| O2P | NZ | LYS- 115 | 2.84 | 0 | Ionic (Protein Cationic) |
| O2P | NZ | LYS- 115 | 2.84 | 158.73 | H-Bond (Protein Donor) |
| O2P | MN | MN- 201 | 2.28 | 0 | Metal Acceptor |
| O3P | MN | MN- 201 | 2.22 | 0 | Metal Acceptor |
| O3P | MN | MN- 202 | 2.15 | 0 | Metal Acceptor |