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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5d4g U5P Polymerase acidic protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5d4g U5PPolymerase acidic protein / 0.858
5ccy TMPPolymerase acidic protein / 0.847
4avl TMPPolymerase acidic protein / 0.803
4tln LNOThermolysin 3.4.24.27 0.667
4e5l DBHPolymerase acidic protein / 0.662
1ol7 ADPAurora kinase A 2.7.11.1 0.660
2ozo ANPTyrosine-protein kinase ZAP-70 2.7.10.2 0.654
4y9x UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.652
5cno ANPEpidermal growth factor receptor 2.7.10.1 0.650