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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4aut FAD Decaprenylphosphoryl-beta-D-ribose oxidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.506
4f4q FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.395
4fdp FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.390
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.342
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 1.327
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.838
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 0.829
4pyt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.820
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.816
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.812
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.796
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.762
3pm9 FADPutative oxidoreductase / 0.761
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.745
1ffu FADCarbon monoxide dehydrogenase medium chain / 0.722
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.708
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.694
3aty FMNProstaglandin F2a synthase / 0.687
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.685
2ohh FMNType A flavoprotein FprA 1 0.681
3ge6 FMNNitroreductase / 0.678
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.671
2c12 FADNitroalkane oxidase 1.7.3.1 0.671
1qo8 FADFumarate reductase flavoprotein subunit / 0.667
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.666
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.665
2rgo FADAlpha-Glycerophosphate Oxidase / 0.663
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.660
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.660
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.659
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.656
1ycf FMNNitric oxide reductase 1 0.654
4ysw FADXanthine dehydrogenase/oxidase / 0.654
1f0x FADD-lactate dehydrogenase 1.1.1.28 0.652
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.652
4bmp FMNProtein NrdI / 0.651