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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4acu QN7 Beta-secretase 1 3.4.23.46

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4acu QN7Beta-secretase 1 3.4.23.46 0.979
4b0q GMFBeta-secretase 1 3.4.23.46 0.947
4djv 0KMBeta-secretase 1 3.4.23.46 0.810
4b05 32DBeta-secretase 1 3.4.23.46 0.785
4azy 7F3Beta-secretase 1 3.4.23.46 0.774
4acx S8ZBeta-secretase 1 3.4.23.46 0.770
4jpc 1M6Beta-secretase 1 3.4.23.46 0.764
4djy 0KRBeta-secretase 1 3.4.23.46 0.760
4b1e 6T6Beta-secretase 1 3.4.23.46 0.746
4djw 0KPBeta-secretase 1 3.4.23.46 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4joo 1M4Beta-secretase 1 3.4.23.46 0.736
4b70 WM9Beta-secretase 1 3.4.23.46 0.730
4b1c 1B1Beta-secretase 1 3.4.23.46 0.721
4fs4 H24Beta-secretase 1 3.4.23.46 0.708
4b1d 6TGBeta-secretase 1 3.4.23.46 0.706
3l5d BDVBeta-secretase 1 3.4.23.46 0.679
4djx 0KQBeta-secretase 1 3.4.23.46 0.664
1c5n ESIProthrombin 3.4.21.5 0.662
4e5f 0N7Polymerase acidic protein / 0.660
2va7 C27Beta-secretase 1 3.4.23.46 0.658
4b00 I6XBeta-secretase 1 3.4.23.46 0.658
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.655
2va6 H24Beta-secretase 1 3.4.23.46 0.653