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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3zbt FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.355
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.281
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.280
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.269
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.255
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.254
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.241
1que FADFerredoxin--NADP reductase 1.18.1.2 1.237
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.224
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.219
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.215
2rc5 FADFerredoxin--NADP reductase / 1.214
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.213
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.209
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.208
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.200
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.198
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.196
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.196
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.191
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.190
3vo2 FADFerredoxin--NADP reductase / 1.189
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.184
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.184
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.182
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.181
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.173
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.151
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.147
1gaw FADFerredoxin / 1.138
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.130
3w5u FADFerredoxin / 1.123
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.114
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.098
1gaq FADFerredoxin / 1.087
2rc6 FADFerredoxin--NADP reductase / 1.069
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.060
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.049
1sm4 FADFerredoxin--NADP reductase / 1.027
1ewy FADFerredoxin--NADP reductase 1.18.1.2 1.015
3qfs FADNADPH--cytochrome P450 reductase / 1.014
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.997
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.968
4yaf FADNADPH--cytochrome P450 reductase / 0.967
1ja1 FADNADPH--cytochrome P450 reductase / 0.961
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.960
3qft FADNADPH--cytochrome P450 reductase / 0.947
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.916
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.914
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.908
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.901
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.897
1ja0 FADNADPH--cytochrome P450 reductase / 0.890
4y9u FADNADPH--cytochrome P450 reductase / 0.887
1tll FADNitric oxide synthase, brain 1.14.13.39 0.882
3qe2 FADNADPH--cytochrome P450 reductase / 0.878
1cqx FADFlavohemoprotein / 0.877
4yau FADNADPH--cytochrome P450 reductase / 0.877
3qfc FADNADPH--cytochrome P450 reductase / 0.871
3qfr FADNADPH--cytochrome P450 reductase / 0.871
1j9z FADNADPH--cytochrome P450 reductase / 0.865
4yao FADNADPH--cytochrome P450 reductase / 0.858
3ojw FADNADPH--cytochrome P450 reductase / 0.855
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.853
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.849
4y7c FADNADPH--cytochrome P450 reductase / 0.843
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.840
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.823
3ojx FADNADPH--cytochrome P450 reductase / 0.805
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.800
2eix FADNADH-cytochrome b5 reductase / 0.789
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.782
1amo FADNADPH--cytochrome P450 reductase / 0.776
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.771
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.770
4y9r FADNADPH--cytochrome P450 reductase / 0.755
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.750
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.747
2bf4 FADNADPH--cytochrome P450 reductase / 0.746
2gpj FADSiderophore-interacting protein / 0.745
2pia FMNPhthalate dioxygenase reductase / 0.733
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.732
2bn4 FADNADPH--cytochrome P450 reductase / 0.726
3q9t FAYUncharacterized protein / 0.705
2bpo FADNADPH--cytochrome P450 reductase / 0.700
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.699
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.693
3e4v FMNUncharacterized protein / 0.689
1a8p FADFerredoxin--NADP reductase / 0.688
2dji FADPyruvate oxidase / 0.686
1gvh FADFlavohemoprotein / 0.681
3a20 FMNFMN-binding protein / 0.681
3fpk FADFerredoxin-NADP reductase / 0.679
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.678
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.677
2ptf FMNUncharacterized protein MTH_863 / 0.676
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.676
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.675
3a6r FMNFMN-binding protein / 0.673
3hjk FADVivid PAS protein VVD / 0.672
1flm FMNFMN-binding protein / 0.670
4qbj NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.669
3a6q FMNFMN-binding protein / 0.662
3vy2 FMNFMN-binding protein / 0.661
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.661
4a95 NHWGlycylpeptide N-tetradecanoyltransferase / 0.660
4k1x FADNADPH:ferredoxin reductase / 0.659
1wlk FMNFMN-binding protein / 0.657
2wuu NHWGlycylpeptide N-tetradecanoyltransferase / 0.656
2z6d FMNPhototropin-2 2.7.11.1 0.656
1wli FMNFMN-binding protein / 0.651
3in6 FMNUncharacterized protein / 0.651
2e83 FMNFMN-binding protein / 0.650
3a3b RBFLumazine protein / 0.650