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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3wt0 ATP Cell division protein FtsA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3wt0 ATPCell division protein FtsA / 1.119
1t44 ATPActin, alpha skeletal muscle / 0.937
1dej ATPMajor actin / 0.919
1s22 ATPActin, alpha skeletal muscle / 0.904
4k41 ATPActin, alpha skeletal muscle / 0.903
3wqt ANPCell division protein FtsA / 0.892
1qz5 ATPActin, alpha skeletal muscle / 0.888
3chw ATPMajor actin / 0.885
4b1v ATPActin, alpha skeletal muscle / 0.876
1wua ATPActin, alpha skeletal muscle / 0.872
1yxq ATPActin, alpha skeletal muscle / 0.868
3a5o ATPMajor actin / 0.861
2q36 ATPActin, alpha skeletal muscle / 0.860
3w3d ATPActin, gamma-enteric smooth muscle / 0.860
3ffk ATPActin, alpha skeletal muscle / 0.855
4pkg ATPActin, alpha skeletal muscle / 0.850
2v51 ATPActin, alpha skeletal muscle / 0.849
4pl8 ATPActin, alpha skeletal muscle / 0.845
1eqy ATPActin, alpha skeletal muscle / 0.842
3m6g ATPActin, alpha skeletal muscle / 0.841
2q97 ATPActin, alpha skeletal muscle / 0.839
4pki ATPActin, alpha skeletal muscle / 0.838
3eku ATPActin-5C / 0.835
1mdu ATPActin, alpha skeletal muscle / 0.831
3mn9 ATPActin-5C / 0.826
3mn7 ATPActin-5C / 0.825
2p9k ATPActin-related protein 2 / 0.823
3mn6 ATPActin-5C / 0.822
3a5m ATPMajor actin / 0.821
1c0f ATPMajor actin / 0.820
3eks ATPActin-5C / 0.819
3m1f ATPActin, alpha skeletal muscle / 0.818
4cbx ATPActin-2 / 0.814
1nlv ATPMajor actin / 0.807
1lot ATPActin, alpha skeletal muscle / 0.803
4ci6 ATPActin / 0.801
3el2 ATPActin-5C / 0.798
4jhd ANPActin-5C / 0.794
3daw ATPActin, alpha skeletal muscle / 0.792
5ce3 ATPActin / 0.789
3wqu ATPCell division protein FtsA / 0.784
1kxp ATPActin, alpha skeletal muscle / 0.782
1rgi ATPActin, alpha skeletal muscle / 0.769
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.763
3tu5 ATPActin, alpha skeletal muscle / 0.760
4a61 ANPPlasmid segregation protein ParM / 0.755
2a41 ATPActin, alpha skeletal muscle / 0.748
1rfq ATPActin, alpha skeletal muscle / 0.745
4brg GNPEctonucleoside triphosphate diphosphohydrolase I / 0.735
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.724
1nm1 ATPMajor actin / 0.716
4m63 ATPActin-5C / 0.714
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.713
2oan ATPActin, cytoplasmic 1 / 0.712
1atn ATPActin, alpha skeletal muscle / 0.709
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.709
1ijj ATPActin, alpha skeletal muscle / 0.701
4k42 ADPActin, alpha skeletal muscle / 0.695
1nmd ATPMajor actin / 0.691
5f1x ATP78 kDa glucose-regulated protein / 0.687
1e4g ATPCell division protein FtsA / 0.674
3ryh GTPTubulin alpha chain / 0.674
3ule ATPActin-related protein 2 / 0.674
3ldl ATP78 kDa glucose-regulated protein / 0.673
4b9q ATPChaperone protein DnaK / 0.673
1ih8 APCNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.669
4yj2 GTPTubulin alpha-1B chain / 0.669
2zgz GNPPlasmid segregation protein ParM / 0.668
4tv9 GTPTubulin alpha-1B chain / 0.666
3ldo ANP78 kDa glucose-regulated protein / 0.663
1kqm ANPMyosin heavy chain, striated muscle / 0.662
1mez GDPAdenylosuccinate synthetase isozyme 1 / 0.662
1h1v ATPActin, alpha skeletal muscle / 0.661
5bsm ATP4-coumarate--CoA ligase 2 6.2.1.12 0.661
3se5 ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.660
1mx0 ANPType 2 DNA topoisomerase 6 subunit B / 0.658
2fsn ADPArchaeal actin homolog / 0.658
3lq2 TDPPyruvate dehydrogenase E1 component 1.2.4.1 0.656
4xjc TTPdCTP deaminase / 0.655
2qwl ADPHeat shock cognate 71 kDa protein / 0.654
4ffb GTPTubulin alpha-1 chain / 0.653
5c03 AGSNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.653
5f2r ACP78 kDa glucose-regulated protein / 0.652
5erm 210Fusicoccadiene synthase 4.2.3.43 0.651