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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3w5u FAD Ferredoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3w5u FADFerredoxin / 1.393
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.178
1gaw FADFerredoxin / 1.171
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.160
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.157
1que FADFerredoxin--NADP reductase 1.18.1.2 1.151
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.149
1gaq FADFerredoxin / 1.148
3vo2 FADFerredoxin--NADP reductase / 1.146
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.145
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.138
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.128
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.123
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.118
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.113
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.111
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.111
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.110
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.102
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.093
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.091
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.088
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.087
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.087
1sm4 FADFerredoxin--NADP reductase / 1.087
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.085
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.080
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.079
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.078
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.075
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.075
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.074
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.072
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.070
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.062
2rc6 FADFerredoxin--NADP reductase / 1.061
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.047
2rc5 FADFerredoxin--NADP reductase / 1.042
1ewy FADFerredoxin--NADP reductase 1.18.1.2 1.028
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.019
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.984
1tll FADNitric oxide synthase, brain 1.14.13.39 0.964
1ja1 FADNADPH--cytochrome P450 reductase / 0.958
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.953
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.936
4yaf FADNADPH--cytochrome P450 reductase / 0.927
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.922
4y9u FADNADPH--cytochrome P450 reductase / 0.902
3qfs FADNADPH--cytochrome P450 reductase / 0.901
4yau FADNADPH--cytochrome P450 reductase / 0.901
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.886
1j9z FADNADPH--cytochrome P450 reductase / 0.878
3qft FADNADPH--cytochrome P450 reductase / 0.878
4y7c FADNADPH--cytochrome P450 reductase / 0.877
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.871
1ja0 FADNADPH--cytochrome P450 reductase / 0.853
3fpk FADFerredoxin-NADP reductase / 0.846
2bf4 FADNADPH--cytochrome P450 reductase / 0.844
3qe2 FADNADPH--cytochrome P450 reductase / 0.842
3qfr FADNADPH--cytochrome P450 reductase / 0.837
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.836
1gvh FADFlavohemoprotein / 0.832
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.825
4yao FADNADPH--cytochrome P450 reductase / 0.820
3ojx FADNADPH--cytochrome P450 reductase / 0.814
3qfc FADNADPH--cytochrome P450 reductase / 0.804
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.800
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.799
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.798
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.789
4y9r FADNADPH--cytochrome P450 reductase / 0.788
3ojw FADNADPH--cytochrome P450 reductase / 0.785
1amo FADNADPH--cytochrome P450 reductase / 0.758
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.740
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.739
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.738
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.733
2gpj FADSiderophore-interacting protein / 0.728
2bgj FADNADPH:ferredoxin reductase / 0.714
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.712
3pl8 FADPyranose 2-oxidase / 0.711
2eix FADNADH-cytochrome b5 reductase / 0.710
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.710
2pia FMNPhthalate dioxygenase reductase / 0.709
1cqx FADFlavohemoprotein / 0.708
4ybn FADFlavin-nucleotide-binding protein / 0.706
4k1x FADNADPH:ferredoxin reductase / 0.698
2igo FADPyranose 2-oxidase / 0.693
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.692
1a8p FADFerredoxin--NADP reductase / 0.690
1rz1 FADPhenol 2-hydroxylase component B / 0.690
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.690
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.689
2bn4 FADNADPH--cytochrome P450 reductase / 0.687
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.685
3lsi FADPyranose 2-oxidase / 0.685
5i39 FADL-amino acid deaminase / 0.685
3pft FMNFlavin reductase / 0.681
2ptf FMNUncharacterized protein MTH_863 / 0.679
2vnh FADNADPH:ferredoxin reductase / 0.677
3ab1 FADFerredoxin--NADP reductase 1.18.1.2 0.677
5buk FADFADH2-dependent halogenase / 0.676
5dbj FADFADH2-dependent halogenase PltA / 0.675
1gpe FADGlucose oxidase 1.1.3.4 0.673
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.673
3lsh FADPyranose 2-oxidase / 0.673
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.671
2dvl FADAcyl-CoA dehydrogenase / 0.671
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.668
4iil RBFMembrane lipoprotein TpN38(b) / 0.666
2qdx FADFerredoxin--NADP+ reductase / 0.665
3lsm SFDPyranose 2-oxidase / 0.665
3ukf FDAUDP-galactopyranose mutase / 0.665
3qvp FADGlucose oxidase 1.1.3.4 0.664
5hy5 FADTryptophan 6-halogenase / 0.663
3ukk FADUDP-galactopyranose mutase / 0.662
2fzn FADBifunctional protein PutA 1.5.5.2 0.659
3bnk FMNFlavoredoxin / 0.659
4l82 FMNUncharacterized protein / 0.659
3q9t FAYUncharacterized protein / 0.658
3vy2 FMNFMN-binding protein / 0.658
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.657
2c3d FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.657
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.657
3up4 FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase 1.14.13.160 0.657
4fk8 FADFerredoxin--NADP reductase / 0.656
1eje FMNProtein MTH_152 / 0.655
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.654
3a6r FMNFMN-binding protein / 0.654
3k4c FADPyranose 2-oxidase / 0.654
2jkc FADFlavin-dependent tryptophan halogenase PrnA 1.14.19.9 0.653
1d7y FADFerredoxin reductase / 0.651
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.651
3a6q FMNFMN-binding protein / 0.651
1usc FMNMonooxygenase / 0.650