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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vy5 FMN FMN-binding protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vy5 FMNFMN-binding protein / 1.054
3awh FMNFMN-binding protein / 1.047
3amf FMNFMN-binding protein / 1.035
3vy2 FMNFMN-binding protein / 1.034
3a6q FMNFMN-binding protein / 1.029
1flm FMNFMN-binding protein / 1.010
3a20 FMNFMN-binding protein / 1.009
3a6r FMNFMN-binding protein / 1.007
1wli FMNFMN-binding protein / 0.982
2e83 FMNFMN-binding protein / 0.982
1wlk FMNFMN-binding protein / 0.940
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.708
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.675
3e4v FMNUncharacterized protein / 0.674
2vnj FADNADPH:ferredoxin reductase / 0.671
2vnk FADNADPH:ferredoxin reductase / 0.671
2vnh FADNADPH:ferredoxin reductase / 0.667
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.666
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.664
3ojw FADNADPH--cytochrome P450 reductase / 0.664
3r5y F42Uncharacterized protein / 0.664
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.664
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.662
1ty9 FMNPhenazine biosynthesis protein PhzG 1.4 0.660
3crz FADFerredoxin--NADP+ reductase / 0.660
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.657
4y7c FADNADPH--cytochrome P450 reductase / 0.657
2bgj FADNADPH:ferredoxin reductase / 0.656
2pia FMNPhthalate dioxygenase reductase / 0.656
2rc5 FADFerredoxin--NADP reductase / 0.656
2rc6 FADFerredoxin--NADP reductase / 0.656
4b4d FADFerredoxin-NADP reductase / 0.656
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.655
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.653
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.653
1usc FMNMonooxygenase / 0.653
4fk8 FADFerredoxin--NADP reductase / 0.653
1cqx FADFlavohemoprotein / 0.651
3qe2 FADNADPH--cytochrome P450 reductase / 0.650