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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vs2 VSB Tyrosine-protein kinase HCK 2.7.10.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vs2 VSBTyrosine-protein kinase HCK 2.7.10.2 1.141
3vs0 VS0Tyrosine-protein kinase HCK 2.7.10.2 0.806
4e5i 0N9Polymerase acidic protein / 0.744
3vs1 VSATyrosine-protein kinase HCK 2.7.10.2 0.713
3vs3 VSETyrosine-protein kinase HCK 2.7.10.2 0.683
4anb YQYDual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.681
3vs7 KS1Tyrosine-protein kinase HCK 2.7.10.2 0.677
2cgw 3C3Serine/threonine-protein kinase Chk1 2.7.11.1 0.671
1iid NHMGlycylpeptide N-tetradecanoyltransferase 2.3.1.97 0.666
2ivv PP1Proto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.665
4rw6 494Gag-Pol polyprotein 2.7.7.49 0.665
2bxf DZPSerum albumin / 0.664
3l8p 0CEAngiopoietin-1 receptor 2.7.10.1 0.664
2gdo 12CSerine/threonine-protein kinase Chk1 2.7.11.1 0.661
3vs5 VSGTyrosine-protein kinase HCK 2.7.10.2 0.660
4e5f 0N7Polymerase acidic protein / 0.660
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.659
3b4p 3B4Phenazine biosynthesis protein A/B / 0.657
2zdt 46CMitogen-activated protein kinase 10 2.7.11.24 0.654
1xxj UNCUricase 1.7.3.3 0.653
1you PFDCollagenase 3 3.4.24 0.653
3zly YSODual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.651