2.110 Å
X-ray
2013-02-04
Name: | Dual specificity mitogen-activated protein kinase kinase 1 |
---|---|
ID: | MP2K1_HUMAN |
AC: | Q02750 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 2.7.12.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 44.765 |
---|---|
Number of residues: | 25 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.330 | 1056.375 |
% Hydrophobic | % Polar |
---|---|
52.40 | 47.60 |
According to VolSite |
HET Code: | YSO |
---|---|
Formula: | C8H6N4 |
Molecular weight: | 158.160 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 72.2 % |
Polar Surface area: | 78.48 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 0 |
X | Y | Z |
---|---|---|
-19.7954 | 28.4332 | -2.88142 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5 | CD1 | LEU- 74 | 4.46 | 0 | Hydrophobic |
CAB | CG2 | VAL- 82 | 3.77 | 0 | Hydrophobic |
CAC | CG1 | VAL- 82 | 3.96 | 0 | Hydrophobic |
CAH | CB | ALA- 95 | 3.58 | 0 | Hydrophobic |
CAD | CE | MET- 143 | 3.67 | 0 | Hydrophobic |
CAL | SD | MET- 143 | 3.42 | 0 | Hydrophobic |
NAM | O | GLU- 144 | 2.93 | 148.25 | H-Bond (Ligand Donor) |
NAJ | N | MET- 146 | 2.97 | 159.91 | H-Bond (Protein Donor) |
NAI | O | MET- 146 | 3.26 | 146.75 | H-Bond (Ligand Donor) |
CAC | CD2 | LEU- 197 | 3.9 | 0 | Hydrophobic |
CAH | CD1 | LEU- 197 | 3.34 | 0 | Hydrophobic |
CAD | SG | CYS- 207 | 4.18 | 0 | Hydrophobic |
NAI | O | HOH- 2017 | 3.48 | 140.77 | H-Bond (Ligand Donor) |