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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3vjl W94 Dipeptidyl peptidase 4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3vjl W94Dipeptidyl peptidase 4 / 1.006
3vjk M51Dipeptidyl peptidase 4 / 0.906
4dtc D5CDipeptidyl peptidase 4 / 0.791
4ffw 715Dipeptidyl peptidase 4 / 0.754
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3qbj NXZDipeptidyl peptidase 4 / 0.735
2rgu 356Dipeptidyl peptidase 4 / 0.668
4a5s N7FDipeptidyl peptidase 4 / 0.666
2ntr L00Beta-secretase 1 3.4.23.46 0.660
2oae AILDipeptidyl peptidase 4 / 0.659
3ccb B2YDipeptidyl peptidase 4 / 0.652
3g0g RUMDipeptidyl peptidase 4 / 0.650