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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ust FAD AcMNPV orf92

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ust FADAcMNPV orf92 / 1.353
3qzy FADFAD-linked sulfhydryl oxidase / 1.052
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.783
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.754
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.750
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.749
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.748
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.745
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.741
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.737
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.734
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.728
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 0.726
4eet FMNPhototropin-2 2.7.11.1 0.725
5djt FMNNPH1-2 / 0.720
5j3w FMNSensory box protein / 0.709
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.704
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.701
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.700
2z6d FMNPhototropin-2 2.7.11.1 0.698
1rp4 FADEndoplasmic oxidoreductin-1 1.8.4 0.694
5efw FMNNPH1-1 / 0.694
2bn4 FADNADPH--cytochrome P450 reductase / 0.692
1g28 FMNPHY3 / 0.691
4ees FMNPhototropin-2 2.7.11.1 0.691
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.688
3gwn FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.687
1gal FADGlucose oxidase 1.1.3.4 0.685
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.680
3hjk FADVivid PAS protein VVD / 0.678
4eep FMNPhototropin-2 2.7.11.1 0.676
3m31 FADEndoplasmic oxidoreductin-1 1.8.4 0.674
3qe2 FADNADPH--cytochrome P450 reductase / 0.674
2q7v FADThioredoxin reductase / 0.669
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 0.668
1s4m LUMRiboflavin biosynthesis protein / 0.665
2h94 FADLysine-specific histone demethylase 1A 1 0.664
5dju FMNNPH1-2 / 0.663
2yg4 FADPutrescine oxidase / 0.662
4kuk RBFPutative blue-light photoreceptor / 0.661
2z6c FMNPhototropin-1 2.7.11.1 0.660
3lov FADProtoporphyrinogen oxidase / 0.660
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.659
3sm8 FNKFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.658
3ish FADThioredoxin reductase 1.8.1.9 0.656
3ka7 FADPutative oxidoreductase / 0.656
4opg FDAConserved Archaeal protein / 0.656
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.655
2e1m FADL-glutamate oxidase / 0.655
3nix FADFlavoprotein/dehydrogenase / 0.654
1zmd FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.653
4opd FDAConserved Archaeal protein / 0.651
2qa2 FADPolyketide oxygenase CabE / 0.650