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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ulk NDP Ketol-acid reductoisomerase (NADP(+))

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ulk NDPKetol-acid reductoisomerase (NADP(+)) / 1.051
3fr8 NDPKetol-acid reductoisomerase, chloroplastic 1.1.1.86 0.733
4kqw NAPKetol-acid reductoisomerase (NADP(+)) / 0.730
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.702
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.699
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.695
4xr9 NADCalS8 / 0.689
1h6a NDPGlucose--fructose oxidoreductase 1.1.99.28 0.686
3d4p NADL-lactate dehydrogenase 1 1.1.1.27 0.676
5a04 NDPGlucose-fructose oxidoreductase / 0.676
3h3j NADL-lactate dehydrogenase 1 1.1.1.27 0.673
4nfh NAJAlcohol dehydrogenase E chain 1.1.1.1 0.673
3zhb NAPPutative dehydrogenase / 0.671
5a06 NDPGlucose-fructose oxidoreductase / 0.671
2voj NADAlanine dehydrogenase 1.4.1.1 0.670
4xgi NADGlutamate dehydrogenase / 0.670
1zh8 NAPUncharacterized protein / 0.669
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.668
1cf2 NAPGlyceraldehyde-3-phosphate dehydrogenase / 0.667
2o4c NADErythronate-4-phosphate dehydrogenase / 0.665
3hwr NDP2-dehydropantoate 2-reductase / 0.664
2i9p NAD3-hydroxyisobutyrate dehydrogenase, mitochondrial 1.1.1.31 0.663
2ohx NADAlcohol dehydrogenase E chain 1.1.1.1 0.663
2cvz NDP3-hydroxyisobutyrate dehydrogenase / 0.662
2yut NAPPutative short-chain oxidoreductase / 0.662
1yon A2R2-dehydropantoate 2-reductase 1.1.1.169 0.661
1nvm NADAcetaldehyde dehydrogenase 1.2.1.10 0.659
2h63 NAPBiliverdin reductase A 1.3.1.24 0.659
3ikt NADRedox-sensing transcriptional repressor Rex / 0.659
3tri NAPPyrroline-5-carboxylate reductase / 0.658
3f3s NADLambda-crystallin homolog / 0.657
5bsg NAPPyrroline-5-carboxylate reductase / 0.657
1kev NDPNADP-dependent isopropanol dehydrogenase 1.1.1.80 0.656
3m2t NADProbable dehydrogenase / 0.655
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.655
1q0q NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.653
4hxy NDPPlm1 / 0.653
4okn NAIL-lactate dehydrogenase A chain 1.1.1.27 0.653
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.653
4yag NAIC alpha-dehydrogenase / 0.650
5a03 NDPGlucose-fructose oxidoreductase / 0.650