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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3te4 ACO Dopamine N-acetyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3te4 ACODopamine N-acetyltransferase / 1.204
4r3k COAN-alpha-acetyltransferase 2.3.1 0.862
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.829
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.824
4kub COAUncharacterized protein / 0.824
3pgp ACOUncharacterized protein / 0.823
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.809
5kf8 ACOPredicted acetyltransferase / 0.806
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.790
5kf9 ACOPredicted acetyltransferase / 0.790
5kgp ACOPredicted acetyltransferase / 0.790
2cns ACORibosomal-protein-alanine acetyltransferase / 0.786
5kf1 ACOPredicted acetyltransferase / 0.786
3mgd ACOPredicted acetyltransferase / 0.779
1wwz ACOUncharacterized protein / 0.778
2x7b COAN-alpha-acetyltransferase 2.3.1 0.771
5kgh ACOPredicted acetyltransferase / 0.771
5kgj ACOPredicted acetyltransferase / 0.771
5kf2 ACOPredicted acetyltransferase / 0.769
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 0.767
1ghe ACOAcetyltransferase 2.3.1 0.766
1kuv CA5Serotonin N-acetyltransferase / 0.766
1qsm ACOHistone acetyltransferase HPA2 / 0.761
1j4j ACOAcetyltransferase 2.3.1 0.760
3fbu COAAcetyltransferase, GNAT family / 0.760
1l0c COTSerotonin N-acetyltransferase / 0.756
2r8v ACOAmino-acid acetyltransferase / 0.756
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.755
2a4n COAAac(6')-Ii protein / 0.749
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.746
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.741
2bsw CAOProbable acetyltransferase / 0.739
2jdd ACOProbable acetyltransferase / 0.737
4c2x NHWGlycylpeptide N-tetradecanoyltransferase 2 / 0.737
2cnt COARibosomal-protein-alanine acetyltransferase / 0.736
3r1k COAN-acetyltransferase Eis / 0.736
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.735
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.734
4qvt ACOAcetyltransferase YpeA 2.3.1 0.734
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.728
4jwp ACOGCN5-related N-acetyltransferase / 0.728
1n71 COAAac(6')-Ii protein / 0.724
2jdc CAOProbable acetyltransferase / 0.724
3exn ACOProbable acetyltransferase / 0.724
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.723
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.723
1kux CA3Serotonin N-acetyltransferase / 0.722
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.721
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 0.719
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.718
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.716
3s6f COAUncharacterized protein / 0.713
1kuy COTSerotonin N-acetyltransferase / 0.712
1cjw COTSerotonin N-acetyltransferase / 0.711
3f0a ACOSpermidine N(1)-acetyltransferase / 0.711
5kf2 COAPredicted acetyltransferase / 0.711
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.710
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 0.710
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.709
4kvm SER_ALA_SER_GLU_1XEN-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.708
2cy2 ACOProbable acetyltransferase / 0.702
2vzz SCAPutative succinyl-CoA transferase Rv0802c 2.8.3 0.702
3f8k COAUncharacterized protein / 0.699
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.697
5kf1 COAPredicted acetyltransferase / 0.697
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.696
3k9u ACOSpermidine N(1)-acetyltransferase / 0.695
5kf8 COAPredicted acetyltransferase / 0.695
3cz7 ACOHistone acetyltransferase RTT109 2.3.1.48 0.691
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.691
1m1d LYXHAT A1 / 0.690
3r95 ACOMccE protein / 0.690
3r96 ACOMccE protein / 0.690
1s7n COAAcetyl transferase / 0.687
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.687
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.685
1qsr ACOHAT A1 / 0.684
2zfn ACOHistone acetyltransferase RTT109 2.3.1.48 0.684
2b58 COADiamine acetyltransferase 1 / 0.683
4xpd ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.683
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 0.682
2vqy ACOAAC(6')-Ib / 0.681
4c2z MYAGlycylpeptide N-tetradecanoyltransferase 1 / 0.681
2psw COAN-alpha-acetyltransferase 50 / 0.680
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.680
3d2m COAAmino-acid acetyltransferase / 0.679
5c88 COAN-alpha-acetyltransferase / 0.678
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.677
1ib1 COTSerotonin N-acetyltransferase / 0.675
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.673
2ft0 ACOdTDP-fucosamine acetyltransferase / 0.673
2b3v ACODiamine acetyltransferase 1 / 0.669
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.666
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 0.666
2rc4 ACOHistone acetyltransferase KAT6A / 0.663
3bj7 COADiamine acetyltransferase 1 / 0.663
3gy9 COAGCN5-related N-acetyltransferase / 0.663
5hwr COAHydroxymethylglutaryl-CoA synthase / 0.661
3dr8 ACOL-methionine sulfoximine/L-methionine sulfone acetyltransferase / 0.656
4b5p ACOAlpha-tubulin N-acetyltransferase 1 / 0.656
1pua COAHAT A1 / 0.653
2zw4 COABleomycin acetyltransferase / 0.652
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.651
2fxf ACODiamine acetyltransferase 1 / 0.651