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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3sqq 99Z Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 1.023
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.899
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.872
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.870
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.852
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 0.845
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.836
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.833
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.807
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.794
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.793
3qu0 X40Cyclin-dependent kinase 2 2.7.11.22 0.788
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.778
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.761
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.759
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.751
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.740
3qtr X36Cyclin-dependent kinase 2 2.7.11.22 0.738
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.729
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.719
3qqk X02Cyclin-dependent kinase 2 2.7.11.22 0.711
4acm 7YGCyclin-dependent kinase 2 2.7.11.22 0.710
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.708
3lfs A07Cyclin-dependent kinase 2 2.7.11.22 0.702
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.684
3qzi X72Cyclin-dependent kinase 2 2.7.11.22 0.676
2vtj LZ4Cyclin-dependent kinase 2 2.7.11.22 0.671
4ez3 0S0Cyclin-dependent kinase 2 2.7.11.22 0.668
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.662
4fkq 42KCyclin-dependent kinase 2 2.7.11.22 0.659
3r8v Z62Cyclin-dependent kinase 2 2.7.11.22 0.655
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.653
1h1r 6CPCyclin-dependent kinase 2 2.7.11.22 0.650