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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rmf 20Z Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 1.078
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 1.045
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 1.016
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.936
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.909
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.866
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.865
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 0.845
3qtr X36Cyclin-dependent kinase 2 2.7.11.22 0.823
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.821
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.815
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.797
3qu0 X40Cyclin-dependent kinase 2 2.7.11.22 0.779
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.774
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.758
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.756
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.730
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.718
2iw8 4SPCyclin-dependent kinase 2 2.7.11.22 0.704
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.701
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.685
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.681
4bgh 3I6Cyclin-dependent kinase 2 2.7.11.22 0.674
4fx3 60KCyclin-dependent kinase 2 2.7.11.22 0.669
3qqk X02Cyclin-dependent kinase 2 2.7.11.22 0.665
1urw I1PCyclin-dependent kinase 2 2.7.11.22 0.664
4ez3 0S0Cyclin-dependent kinase 2 2.7.11.22 0.663
2uzd C85Cyclin-dependent kinase 2 2.7.11.22 0.657
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.656
2c6l DT4Cyclin-dependent kinase 2 2.7.11.22 0.655
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.652