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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r9h Z67 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 1.016
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.827
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.816
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.791
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.775
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.774
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.773
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.772
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.762
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 0.759
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.754
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.750
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.746
3qu0 X40Cyclin-dependent kinase 2 2.7.11.22 0.735
2iw8 4SPCyclin-dependent kinase 2 2.7.11.22 0.734
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.731
4ez3 0S0Cyclin-dependent kinase 2 2.7.11.22 0.718
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.716
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.715
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.710
2c6i DT1Cyclin-dependent kinase 2 2.7.11.22 0.704
3rzb 02ZCyclin-dependent kinase 2 2.7.11.22 0.704
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.701
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.700
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.700
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.695
1oi9 N20Cyclin-dependent kinase 2 2.7.11.22 0.684
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.683
1oiu N76Cyclin-dependent kinase 2 2.7.11.22 0.681
3s0o 50ZCyclin-dependent kinase 2 2.7.11.22 0.675
1y8y CT7Cyclin-dependent kinase 2 2.7.11.22 0.674
1h1s 4SPCyclin-dependent kinase 2 2.7.11.22 0.669
2uzo C62Cyclin-dependent kinase 2 2.7.11.22 0.665
3qtr X36Cyclin-dependent kinase 2 2.7.11.22 0.662
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.659
4fkw 62KCyclin-dependent kinase 2 2.7.11.22 0.658
1ykr 628Cyclin-dependent kinase 2 2.7.11.22 0.657
4acm 7YGCyclin-dependent kinase 2 2.7.11.22 0.656
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.655
2c6k DT2Cyclin-dependent kinase 2 2.7.11.22 0.654