sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3oq6 | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3oq6 | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.958 | |
| 4dwv | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.954 | |
| 4nfh | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.950 | |
| 5kj1 | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.950 | |
| 5cds | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.948 | |
| 5cdt | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.945 | |
| 4ng5 | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.944 | |
| 5cdg | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.943 | |
| 5kj6 | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.943 | |
| 5kjc | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.903 | |
| 5kje | PFB | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.874 | |
| 1wet | GUN | HTH-type transcriptional repressor PurR | / | 0.744 | |
| 1xxj | UNC | Uricase | 1.7.3.3 | 0.744 | |
| 2fzk | CTP | Aspartate carbamoyltransferase regulatory chain | / | 0.744 | |
| 2jey | HLO | Acetylcholinesterase | 3.1.1.7 | 0.744 | |
| 2zs9 | ADP | Pantothenate kinase | 2.7.1.33 | 0.744 | |
| 3cwq | ADP | ParA family chromosome partitioning protein | / | 0.744 | |
| 3f8r | NAP | NADH oxidase/thioredoxin reductase | / | 0.744 | |
| 3fzf | ATP | Heat shock cognate 71 kDa protein | / | 0.744 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.744 | |
| 3ypi | PGH | Triosephosphate isomerase | 5.3.1.1 | 0.744 | |
| 4y8v | ADP | Acyl-CoA synthetase (NDP forming) | / | 0.744 | |
| 4z17 | PEP | Enolase | / | 0.744 | |
| 5bnt | NAP | Aspartate-semialdehyde dehydrogenase | 1.2.1.11 | 0.744 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.660 | |
| 2puf | GUN | HTH-type transcriptional repressor PurR | / | 0.660 | |
| 4cdg | ADP | Bloom syndrome protein | 3.6.4.12 | 0.660 | |
| 4nxx | GDP | Mitochondrial dynamics protein MID51 | / | 0.660 |