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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ojx FMN NADPH--cytochrome P450 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ojx FMNNADPH--cytochrome P450 reductase / 1.177
3ojw FMNNADPH--cytochrome P450 reductase / 1.097
3qfr FMNNADPH--cytochrome P450 reductase / 1.046
3qe2 FMNNADPH--cytochrome P450 reductase / 1.039
4oxx FMNCindoxin / 0.916
2bn4 FMNNADPH--cytochrome P450 reductase / 0.909
2bf4 FMNNADPH--cytochrome P450 reductase / 0.894
1ja0 FMNNADPH--cytochrome P450 reductase / 0.886
1amo FMNNADPH--cytochrome P450 reductase / 0.885
4yao FMNNADPH--cytochrome P450 reductase / 0.883
4y7c FMNNADPH--cytochrome P450 reductase / 0.866
1yob FMNFlavodoxin 2 / 0.860
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.839
1fue FMNFlavodoxin / 0.829
3n3a FMNProtein NrdI / 0.826
1j9z FMNNADPH--cytochrome P450 reductase / 0.822
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.818
4bmp FMNProtein NrdI / 0.791
3n39 FMNProtein NrdI / 0.790
1ja1 FMNNADPH--cytochrome P450 reductase / 0.789
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.784
2fcr FMNFlavodoxin / 0.780
4bmo FMNProtein NrdI / 0.767
1aku FMNFlavodoxin / 0.751
3n3b FMNProtein NrdI / 0.751
2ohh FMNType A flavoprotein FprA 1 0.749
2w5u FMNFlavodoxin / 0.734
1wsb FMNFlavodoxin / 0.732
1j8q FMNFlavodoxin / 0.723
1ofv FMNFlavodoxin / 0.719
1c7f FMNFlavodoxin / 0.717
2fx2 FMNFlavodoxin / 0.716
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.715
1azl FMNFlavodoxin / 0.712
1xyv FMNFlavodoxin / 0.711
1akw FMNFlavodoxin / 0.710
1czn FMNFlavodoxin / 0.704
3esz FMNFlavodoxin / 0.702
1akr FMNFlavodoxin / 0.701
3kap FMNFlavodoxin / 0.701
1ahn FMNFlavodoxin 1 / 0.698
1ycf FMNNitric oxide reductase 1 0.694
2q9u FMNA-type flavoprotein / 0.694
2ohi FMNType A flavoprotein FprA 1 0.693
3f6s FMNFlavodoxin / 0.691
1bu5 RBFFlavodoxin / 0.688
2v5v FMNFlavodoxin / 0.685
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.682
1ykg FMNSulfite reductase [NADPH] flavoprotein alpha-component / 0.674
1fx1 FMNFlavodoxin / 0.672
5tgz FMNCannabinoid receptor 1 / 0.672
1ycg FMNNitric oxide reductase 1 0.669
2mt9 FMNFlavodoxin 2 / 0.667
4fx2 FMNFlavodoxin / 0.667
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.664
1j9g FMNFlavodoxin / 0.663
1ych FMNNitric oxide reductase 1 0.662
2ohj FMNType A flavoprotein FprA 1 0.662
2v5u FMNFlavodoxin / 0.662
2gpj FADSiderophore-interacting protein / 0.661
5xra FMNCannabinoid receptor 1 / 0.655
5xr8 FMNCannabinoid receptor 1 / 0.654
5fx2 FMNFlavodoxin / 0.652
3f90 FMNFlavodoxin / 0.651
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.650