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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ojw FMN NADPH--cytochrome P450 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ojw FMNNADPH--cytochrome P450 reductase / 1.191
3qe2 FMNNADPH--cytochrome P450 reductase / 1.109
3ojx FMNNADPH--cytochrome P450 reductase / 1.097
3qfr FMNNADPH--cytochrome P450 reductase / 1.000
2bf4 FMNNADPH--cytochrome P450 reductase / 0.966
2bn4 FMNNADPH--cytochrome P450 reductase / 0.935
1amo FMNNADPH--cytochrome P450 reductase / 0.919
4y7c FMNNADPH--cytochrome P450 reductase / 0.910
1ja0 FMNNADPH--cytochrome P450 reductase / 0.902
4oxx FMNCindoxin / 0.880
4yao FMNNADPH--cytochrome P450 reductase / 0.857
1yob FMNFlavodoxin 2 / 0.839
1ja1 FMNNADPH--cytochrome P450 reductase / 0.834
1j9z FMNNADPH--cytochrome P450 reductase / 0.822
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.791
2fcr FMNFlavodoxin / 0.787
1fue FMNFlavodoxin / 0.786
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.778
3n39 FMNProtein NrdI / 0.776
3n3a FMNProtein NrdI / 0.775
4bmo FMNProtein NrdI / 0.772
1aku FMNFlavodoxin / 0.771
4bmp FMNProtein NrdI / 0.760
3n3b FMNProtein NrdI / 0.759
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.758
1j8q FMNFlavodoxin / 0.742
1ofv FMNFlavodoxin / 0.724
1czn FMNFlavodoxin / 0.717
1akr FMNFlavodoxin / 0.716
1azl FMNFlavodoxin / 0.716
1wsb FMNFlavodoxin / 0.715
2w5u FMNFlavodoxin / 0.715
5tgz FMNCannabinoid receptor 1 / 0.715
2ohh FMNType A flavoprotein FprA 1 0.713
1akw FMNFlavodoxin / 0.711
3f6s FMNFlavodoxin / 0.709
2fx2 FMNFlavodoxin / 0.707
1xyv FMNFlavodoxin / 0.702
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.700
1t5b FMNFMN-dependent NADH-azoreductase / 0.696
1c7f FMNFlavodoxin / 0.694
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.691
2q9u FMNA-type flavoprotein / 0.689
3esz FMNFlavodoxin / 0.688
1fx1 FMNFlavodoxin / 0.684
1ycf FMNNitric oxide reductase 1 0.684
5xra FMNCannabinoid receptor 1 / 0.684
1bu5 RBFFlavodoxin / 0.681
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.681
3kap FMNFlavodoxin / 0.679
2ohj FMNType A flavoprotein FprA 1 0.676
1ahn FMNFlavodoxin 1 / 0.675
1ykg FMNSulfite reductase [NADPH] flavoprotein alpha-component / 0.675
2v5u FMNFlavodoxin / 0.670
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.669
2mt9 FMNFlavodoxin 2 / 0.666
2ohi FMNType A flavoprotein FprA 1 0.666
1j9g FMNFlavodoxin / 0.665
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.665
4fx2 FMNFlavodoxin / 0.664
4j8p FMNFlavodoxin / 0.664
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.664
5fx2 FMNFlavodoxin / 0.662
1xyy FMNFlavodoxin / 0.661
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.661
5xr8 FMNCannabinoid receptor 1 / 0.661
2v5v FMNFlavodoxin / 0.660
3esy FMNFlavodoxin / 0.659
4jic FMNGTN Reductase / 0.659
1ych FMNNitric oxide reductase 1 0.656
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.656
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.655
1ycg FMNNitric oxide reductase 1 0.655
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.652
3klb FMNUncharacterized protein / 0.651
2zrx FMNIsopentenyl-diphosphate delta-isomerase / 0.650