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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nxq RX4 Angiotensin-converting enzyme 3.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nxq RX4Angiotensin-converting enzyme 3.2.1 1.214
4bxk 1IUAngiotensin-converting enzyme 3.2.1 0.975
2x97 RX4Angiotensin-converting enzyme 3.4.15.1 0.956
4ca6 3EFAngiotensin-converting enzyme 3.2.1 0.919
4ca7 3EFAngiotensin-converting enzyme 3.4.15.1 0.903
4ca5 3EFAngiotensin-converting enzyme 3.2.1 0.844
2xyd 3ESAngiotensin-converting enzyme 3.2.1 0.833
4ca8 3ESAngiotensin-converting enzyme 3.4.15.1 0.818
2x96 RX3Angiotensin-converting enzyme 3.4.15.1 0.767
4bzr K26Angiotensin-converting enzyme 3.2.1 0.760
2xy9 3ESAngiotensin-converting enzyme 3.2.1 0.752
2oc2 RX3Angiotensin-converting enzyme 3.2.1 0.750
3aho 3A2Oligopeptidase / 0.750
3ahn 3A1Oligopeptidase / 0.749
2x93 X93Angiotensin-converting enzyme 3.4.15.1 0.728
2x92 X92Angiotensin-converting enzyme 3.4.15.1 0.725
1uze EALAngiotensin-converting enzyme 3.2.1 0.706
3bkk KAFAngiotensin-converting enzyme 3.2.1 0.704
2x94 X94Angiotensin-converting enzyme 3.4.15.1 0.691
1o86 LPRAngiotensin-converting enzyme 3.2.1 0.688
2x91 LPRAngiotensin-converting enzyme 3.4.15.1 0.679