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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

2x94

1.880 Å

X-ray

2010-03-14

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Angiotensin-converting enzyme
ID:ACE_DROME
AC:Q10714
Organism:Drosophila melanogaster
Reign:Eukaryota
TaxID:7227
EC Number:3.4.15.1


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:24.071
Number of residues:29
Including
Standard Amino Acids: 28
Non Standard Amino Acids: 1
Water Molecules: 0
Cofactors:
Metals: ZN

Cavity properties

LigandabilityVolume (Å3)
0.7461535.625

% Hydrophobic% Polar
29.4570.55
According to VolSite

Ligand :
2x94_1 Structure
HET Code: X94
Formula: C17H27N2O5
Molecular weight: 339.407 g/mol
DrugBank ID: -
Buried Surface Area:60.74 %
Polar Surface area: 117.18 Å2
Number of
H-Bond Acceptors: 5
H-Bond Donors: 1
Rings: 2
Aromatic rings: 0
Anionic atoms: 2
Cationic atoms: 1
Rule of Five Violation: 0
Rotatable Bonds: 7

Mass center Coordinates

XYZ
28.77333.65054-43.9146


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
OAGNE2GLN- 2653.01166.54H-Bond
(Protein Donor)
ONE2HIS- 3372.67142.31H-Bond
(Protein Donor)
NOALA- 3382.82138.76H-Bond
(Ligand Donor)
CBCBALA- 3383.940Hydrophobic
CAKCBSER- 3394.240Hydrophobic
CAICBHIS- 3674.340Hydrophobic
CANCZPHE- 4414.250Hydrophobic
OADNZLYS- 4953.910Ionic
(Protein Cationic)
OAGNZLYS- 4952.770Ionic
(Protein Cationic)
OAGNZLYS- 4952.77164.38H-Bond
(Protein Donor)
CAACE2TYR- 4963.810Hydrophobic
ONE2HIS- 4972.75141.11H-Bond
(Protein Donor)
CAACG2VAL- 5024.160Hydrophobic
OAGOHTYR- 5042.64160.87H-Bond
(Protein Donor)
OACOHTYR- 5072.66165.03H-Bond
(Protein Donor)
CATCE1TYR- 5073.820Hydrophobic
CANCD1TYR- 5074.190Hydrophobic
CALCE2PHE- 5114.090Hydrophobic
OAFZN ZN- 16162.590Metal Acceptor
OACZN ZN- 16161.920Metal Acceptor