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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nlq H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.889
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.875
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.873
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.872
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.872
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.870
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.869
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.868
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.859
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.859
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.858
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.858
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.858
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.857
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.857
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.857
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.857
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.857
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.857
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.857
3png H4BNitric oxide synthase, brain 1.14.13.39 0.856
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.856
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.856
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.855
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.855
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.855
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.855
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.855
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.854
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.854
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.854
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.854
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.854
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.854
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.854
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.854
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.854
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.853
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.853
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.853
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.853
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.853
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.853
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.853
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.853
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.852
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.852
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.852
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.852
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.852
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.851
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.851
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.850
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.849
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.848
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.846
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.845
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.845
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.845
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.844
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.840
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.840
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.839
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.839
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.839
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.838
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.838
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.838
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.837
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.837
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.836
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.835
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.835
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.835
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.834
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.834
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.834
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.834
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.833
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.830
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.827
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.825
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.825
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.824
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.824
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.823
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.823
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.822
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.820
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.819
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.819
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.818
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.818
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.817
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.816
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.815
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.804
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.794
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.784
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.784
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.782
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.779
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.768
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.748
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.721
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.720
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.704
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.702
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.702
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.696
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.686
3e7g H4BNitric oxide synthase, inducible 1.14.13.39 0.677
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.666
1qom H4BNitric oxide synthase, inducible 1.14.13.39 0.664
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.663
4e5f 0N7Polymerase acidic protein / 0.660
3e6t H4BNitric oxide synthase, inducible 1.14.13.39 0.657