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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n5z H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.933
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.923
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.922
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.921
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.908
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.907
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.907
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.906
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.905
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.905
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.905
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.904
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.903
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.891
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.891
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.890
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.890
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.888
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.887
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.887
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.886
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.886
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.885
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.885
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.885
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.885
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.884
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.883
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.883
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.880
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.878
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.876
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.875
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.872
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.872
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.871
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.871
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.871
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.870
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.870
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.869
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.869
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.869
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.868
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.868
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.868
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.867
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.867
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.867
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.867
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.866
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.866
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.866
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.866
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.866
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.865
3png H4BNitric oxide synthase, brain 1.14.13.39 0.865
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.865
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.864
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.864
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.864
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.864
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.861
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.854
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.854
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.851
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.850
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.850
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.849
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.848
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.847
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.846
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.846
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.845
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.845
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.842
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.842
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.834
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.833
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.831
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.829
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.827
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.823
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.822
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.820
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.818
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.816
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.816
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.816
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.815
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.812
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.811
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.810
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.808
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.797
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.796
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.791
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.789
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.787
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.774
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.773
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.759
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.725
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.717
3nw2 H4BNitric oxide synthase, inducible 1.14.13.39 0.706
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.694
3dwj H4BNitric oxide synthase, inducible 1.14.13.39 0.692
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.690
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.685
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.684
4uga H4BNitric oxide synthase oxygenase 1.14.13.165 0.683
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.672
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.672
3e7g H4BNitric oxide synthase, inducible 1.14.13.39 0.668
4e5f 0N7Polymerase acidic protein / 0.660
3e6t H4BNitric oxide synthase, inducible 1.14.13.39 0.655
1m9t H4BNitric oxide synthase, inducible 1.14.13.39 0.652