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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n5w XFJ Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n5w XFJNitric oxide synthase, brain 1.14.13.39 1.048
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.931
3n65 XFJNitric oxide synthase, brain 1.14.13.39 0.923
3n5x XFKNitric oxide synthase, brain 1.14.13.39 0.880
4jsf QJ4Nitric oxide synthase, brain 1.14.13.39 0.857
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.848
3n61 XFJNitric oxide synthase, brain 1.14.13.39 0.836
4imw 1EVNitric oxide synthase, brain 1.14.13.39 0.803
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.774
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.766
4ug5 XFKNitric oxide synthase oxygenase 1.14.13.165 0.755
3nlr JRSNitric oxide synthase, brain 1.14.13.39 0.754
4imu 1ETNitric oxide synthase, brain 1.14.13.39 0.747
3jwu J11Nitric oxide synthase, brain 1.14.13.39 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3b3p JI7Nitric oxide synthase, brain 1.14.13.39 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4ug7 1EVNitric oxide synthase oxygenase 1.14.13.165 0.738
3n5y XFLNitric oxide synthase, brain 1.14.13.39 0.733
4jsi Q05Nitric oxide synthase, brain 1.14.13.39 0.731
3jx4 J11Nitric oxide synthase, brain 1.14.13.39 0.729
3ufr H5WNitric oxide synthase, brain 1.14.13.39 0.729
3nlp JSSNitric oxide synthase, brain 1.14.13.39 0.728
4imt 1EWNitric oxide synthase, brain 1.14.13.39 0.728
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.725
3ufo HW4Nitric oxide synthase, brain 1.14.13.39 0.723
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.723
4jse QJ2Nitric oxide synthase, brain 1.14.13.39 0.721
3b3o JI3Nitric oxide synthase, brain 1.14.13.39 0.720
3jx5 J14Nitric oxide synthase, brain 1.14.13.39 0.718
3tym 08RNitric oxide synthase, brain 1.14.13.39 0.714
3ufp H4WNitric oxide synthase, brain 1.14.13.39 0.710
3nlk JSSNitric oxide synthase, brain 1.14.13.39 0.707
3n63 XFNNitric oxide synthase, brain 1.14.13.39 0.705
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.702
3tyl AXWNitric oxide synthase, brain 1.14.13.39 0.701
3jws JI4Nitric oxide synthase, brain 1.14.13.39 0.698
3ufu HW8Nitric oxide synthase, brain 1.14.13.39 0.697
3nlo JSRNitric oxide synthase, brain 1.14.13.39 0.693
4k5f Q14Nitric oxide synthase, brain 1.14.13.39 0.693
4k5e 1Q7Nitric oxide synthase, brain 1.14.13.39 0.692
3ufv HW9Nitric oxide synthase, brain 1.14.13.39 0.691
3nlv 3XANitric oxide synthase, brain 1.14.13.39 0.689
3e68 AT6Nitric oxide synthase, inducible 1.14.13.39 0.686
3n5z XFMNitric oxide synthase, brain 1.14.13.39 0.684
3n5v XFHNitric oxide synthase, brain 1.14.13.39 0.683
3nlq JRRNitric oxide synthase, brain 1.14.13.39 0.682
3ufw HW0Nitric oxide synthase, brain 1.14.13.39 0.677
4jsh Q15Nitric oxide synthase, brain 1.14.13.39 0.673
4jsg Q10Nitric oxide synthase, brain 1.14.13.39 0.672
4cx5 HW8Nitric oxide synthase, brain 1.14.13.39 0.669
4ug9 1EWNitric oxide synthase oxygenase 1.14.13.165 0.667
3png 8CXNitric oxide synthase, brain 1.14.13.39 0.661
1qw5 14WNitric oxide synthase, inducible 1.14.13.39 0.660
4e5f 0N7Polymerase acidic protein / 0.660
3ufs HW6Nitric oxide synthase, brain 1.14.13.39 0.656
4cx4 HW9Nitric oxide synthase, brain 1.14.13.39 0.654
4jsj QJ7Nitric oxide synthase, brain 1.14.13.39 0.654
4lwa Q13Nitric oxide synthase oxygenase 1.14.13.165 0.654